Dedalus Project
latest
Installing Dedalus
Full-stack conda installation (recommended)
Custom conda installation
Installing the Dedalus package
Installing from PyPI
Building from source
Updating Dedalus
Uninstalling Dedalus
Alternative installation procedures
Full-stack installation shell script
Install notes for PSC/Bridges: Intel stack
Python stack
Numpy and BLAS libraries
Python library stack
Dedalus
Running Dedalus on Bridges
Install notes for Compute Canada’s clusters
Notes
Instructions
Install notes for MIT Engaging Cluster
Modules and paths
Build procedure
Notes
Install notes for CU/Janus
Building Openmpi
Building Python3
Installing pip
Installing mpi4py
Installing FFTW3
Installing nose
Installing cython
Building numpy against MKL
Test numpy install
Installing Scipy
Installing matplotlib
Installing HDF5 with parallel support
Installing h5py
Installing Mercurial
Preliminaries
Install notes for NASA/Discover
Install notes for NASA/Pleiades
Install notes for NASA/Pleiades: Intel stack
Install notes for NASA/Pleiades: Intel stack with MPI-SGI
Install notes for NASA/Pleiades: gcc stack
Old instructions
Install notes for BRC HPC SAVIO cluster
Using Dedalus
Install notes for TACC/Stampede
Modules
Python stack
Numpy and BLAS libraries
Python library stack
Dedalus2
Running Dedalus on Stampede
Skipped libraries
Install notes for Trestles
Modules
Building Python3
Installing virtualenv
Building OpenBLAS
Building numpy
Installing Scipy
Installing mpi4py
Installing cython
Installing matplotlib
UMFPACK
Dedalus2
Tutorials & Examples
Tutorial Notebooks
Tutorial 1: Coordinates, Distributors, and Bases
1.1: Coordinates
1.2: Distributors
1.3: Bases
Tutorial 2: Fields and Operators
2.1: Fields
2.2: Operators
Tutorial 3: Problems and Solvers
3.1: Problems
3.2: Solvers
Tutorial 4: Analysis and Post-processing
4.1: Analysis
4.2: Post-processing
Example Scripts
Cartesian examples
Mathieu functions (1D EVP)
Waves on a string (1D EVP)
KdV-Burgers equation (1D IVP)
Rayleigh-Benard convection (2D IVP)
Periodic shear flow (2D IVP)
Poisson equation (2D LBVP)
Curvilinear examples
Pipe flow (disk EVP)
Librational instability (disk IVP)
Spherical shallow water (sphere IVP)
Spherical shell convection (shell IVP)
Internally heated convection (ball IVP)
Lane-Emden equation (ball NLBVP)
User Guide & How-To’s
Problem Formulations
Linear Boundary-Value Problems (LBVPs)
Initial-Value Problems (IVPs)
Eigenvalue Problems (EVPs)
Nonlinear Boundary-Value Problems (NLBVPs)
Performance Tips
Stack Configuration
Disable multithreading
Efficient discretizations
Resolutions for faster transforms
Process meshes for better load balancing
Avoid empty cores
Problem Formulation
Minimize the number of problem variables
Avoid non-smooth or rational-function NCCs
Timestepping
Avoid changing the simulation timestep unless necessary
Configuring Dedalus
Troubleshooting
Singular matrix errors
Sparse EVP accuracy or convergence errors
Out of memory errors
Maintaining Hermitian symmetry with real variables
Changes from Dedalus v2
Coordinate and Distributor objects
No global domain / bases
Vector and tensor-valued fields
Vector calculus operators
Problem namespaces
Gauge conditions
Tau terms
Virtual HDF5 datasets
Gauge Conditions
Tau Method
A first example
Systems in first-order form
Higher-order systems
Disks and balls
Summary
Half Dimensions
Cartesian problems
Curvilinear problems
Methodology
Dedalus Methods Paper
Curvilinear Bases
Dedalus API reference
Subpackages
dedalus.core
Submodules
dedalus.extras
Submodules
dedalus.libraries
Subpackages
Submodules
dedalus.tests
Submodules
Package Contents
dedalus.tools
Submodules
Submodules
dedalus.public
Package Contents
logger
Dedalus Project
Index
Edit on GitHub
Index
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C
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E
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F
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G
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H
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I
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J
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K
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O
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P
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U
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Y
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Z
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Γ
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Δ
A
A (RK111 attribute)
(RK222 attribute)
(RK443 attribute)
(RKGFY attribute)
ab_range (in module dedalus.tests.test_jacobi_operators)
(in module test_jacobi)
action (TensorProduct property)
Add (class in dedalus.core.arithmetic)
add() (OrderedSet method)
add_axes() (MultiFigure method)
add_dictionary_handler() (Evaluator method)
add_file_handler() (Evaluator method)
(in module dedalus.tools.logging)
add_frequency() (CFL method)
add_handler() (Evaluator method)
add_property() (GlobalFlowProperty method)
add_solver() (in module dedalus.libraries.matsolvers)
add_sparse() (in module dedalus.tools.array)
add_stdout_handler() (in module dedalus.tools.logging)
add_system() (Handler method)
add_system_handler() (Evaluator method)
add_task() (H5FileHandlerBase method)
(Handler method)
add_tasks() (Handler method)
add_velocity() (CFL method)
AdvectiveCFL (class in dedalus.core.operators)
aliased (UnaryGridFunction attribute)
allgather_data() (Field method)
allreduce_data_max() (Field method)
allreduce_data_norm() (Field method)
allreduce_L2_norm() (Field method)
alpha (in module dedalus.libraries.dedalus_sphere.annulus)
(in module dedalus.libraries.dedalus_sphere.shell)
(in module dedalus.libraries.dedalus_sphere.zernike)
alpha_range (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
amax (CNAB1 attribute)
(CNAB2 attribute)
(SBDF1 attribute)
(SBDF2 attribute)
(SBDF3 attribute)
(SBDF4 attribute)
AngularComponent (class in dedalus.core.operators)
AnnulusBasis (class in dedalus.core.basis)
apply (in module dedalus.libraries.dedalus_sphere.tuple_tools)
apply_dense() (in module dedalus.tools.array)
apply_dense_einsum() (in module dedalus.tools.array)
apply_matrix() (in module dedalus.tools.array)
apply_sparse() (in module dedalus.tools.array)
apply_sparse_dot() (in module dedalus.tools.array)
args (in module dedalus.__main__)
array() (TensorOperator method)
arrow (Codomain property)
assert_sparse_pinv() (in module dedalus.tools.array)
atoms() (Future method)
attempt() (Future method)
attempt_tasks() (Evaluator static method)
Average (class in dedalus.core.operators)
axindex() (in module dedalus.tools.array)
axslice() (in module dedalus.tools.array)
AzimuthalComponent (class in dedalus.core.operators)
B
b() (ZernikeOperator method)
backward() (BallRadialTransform method)
(FFTPACKRealFFT method)
(FFTWComplexFFT method)
(FFTWDCT method)
(FFTWHalfComplexFFT method)
(FFTWRealFFT method)
(NonSeparableTransform method)
(PolynomialTransform method)
(ScipyComplexFFT method)
(ScipyDCT method)
(ScipyRealFFT method)
(SeparableMatrixTransform method)
(SeparableTransform method)
(Sphere method)
backward_angle() (Ball method)
backward_component() (Ball method)
backward_DFT() (in module dedalus.core.transforms)
backward_disk() (in module dedalus.core.transforms)
backward_intertwiner() (SphericalCoordinates method)
backward_matrix() (ComplexFourierMMT method)
(CosineMMT method)
(JacobiMMT method)
(RealFourierMMT method)
(SeparableMatrixTransform method)
backward_reduced() (BallRadialTransform method)
(DiskRadialTransform method)
(SWSHColatitudeTransform method)
backward_spin() (Sphere method)
backward_transform_azimuth() (SphereBasis method)
backward_transform_azimuth_Mmax0() (SphereBasis method)
backward_transform_colatitude() (SphereBasis method)
backward_transform_colatitude_Lmax0() (SphereBasis method)
backward_transform_radius() (AnnulusBasis method)
(BallBasis method)
(DiskBasis method)
(ShellBasis method)
(SphereBasis method)
backward_transform_radius_Nmax0() (DiskBasis method)
backward_vector_intertwiner() (CartesianCoordinates method)
(Coordinate method)
(DirectProduct method)
(PolarCoordinates method)
(S2Coordinates method)
Ball (class in dedalus.libraries.dedalus_sphere.ball_wrapper)
BallBasis (class in dedalus.core.basis)
BallRadialTransform (class in dedalus.core.transforms)
banded (BandedSolver attribute)
(DenseSolver attribute)
(SparseSolver attribute)
BandedQR (class in dedalus.libraries.matsolvers)
BandedSolver (class in dedalus.libraries.matsolvers)
barrier (in module dedalus.libraries.dedalus_sphere.ball_wrapper)
base (Add property)
(TimeDerivative property)
(Trace property)
base_cmd() (in module dedalus.tests)
bases() (Future method)
bases_by_axis() (Domain method)
bases_by_coord() (Domain method)
basis_range (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_transforms)
bench() (in module dedalus.tests)
BlockInverse (class in dedalus.libraries.matsolvers)
bmax (CNAB1 attribute)
(CNAB2 attribute)
(SBDF1 attribute)
(SBDF2 attribute)
(SBDF3 attribute)
(SBDF4 attribute)
bottom_left (Frame property)
bounds_range (in module dedalus.tests.test_fourier_operators)
Box (class in dedalus.extras.plot_tools)
broadcast_ghosts() (Field method)
buffer_size() (Distributor method)
build() (Tree method)
build_annulus() (in module dedalus.tests.test_cfl)
(in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_output)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_transforms)
build_ball() (in module dedalus.tests.test_cfl)
(in module dedalus.tests.test_grid_operators)
(in module dedalus.tests.test_ivp)
(in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_output)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
(in module test_spherical3d_arithmetic_parallel)
build_CC() (in module dedalus.tests.test_cartesian_operators)
build_CF_CF() (in module dedalus.tests.test_transforms)
build_CF_J() (in module dedalus.tests.test_transforms)
build_disk() (in module dedalus.tests.test_cfl)
(in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_output)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_transforms)
build_EVP() (InitialValueProblem method)
build_FC() (in module dedalus.tests.test_cartesian_operators)
build_FF() (in module dedalus.tests.test_cartesian_operators)
build_FFC() (in module dedalus.tests.test_cartesian_operators)
build_FFF() (in module dedalus.tests.test_cartesian_operators)
build_fourier() (in module dedalus.tests.test_cartesian_ncc)
(in module dedalus.tests.test_fourier_operators)
build_grid() (in module dedalus.tools.jacobi)
build_jacobi() (in module dedalus.tests.test_cartesian_ncc)
(in module dedalus.tests.test_jacobi_operators)
build_matrices() (SolverBase method)
(Subproblem method)
build_meridional_ncc_matrix() (ShellBasis method)
build_ncc_matrices() (Add method)
build_ncc_matrix() (ShellBasis method)
build_out() (Future method)
build_periodic_cylinder() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_transforms)
build_periodic_cylindrical_annulus() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_transforms)
build_polynomials() (in module dedalus.tools.jacobi)
build_RF_RF() (in module dedalus.tests.test_transforms)
build_shell() (in module dedalus.tests.test_cfl)
(in module dedalus.tests.test_grid_operators)
(in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_output)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
(in module test_spherical3d_arithmetic_parallel)
build_sphere() (in module dedalus.tests.test_cfl)
(in module dedalus.tests.test_sphere_calculus)
(in module dedalus.tests.test_sphere_ncc)
build_sphere_2d() (in module dedalus.tests.test_transforms)
build_sphere_3d() (in module dedalus.tests.test_transforms)
build_subproblem_matrices() (in module dedalus.core.subsystems)
build_subproblems() (in module dedalus.core.subsystems)
build_subsystems() (in module dedalus.core.subsystems)
build_system() (SystemHandler method)
build_weights() (in module dedalus.tools.jacobi)
C
c (RK111 attribute)
(RK222 attribute)
(RK443 attribute)
(RKGFY attribute)
CachedAttribute (class in dedalus.tools.cache)
CachedClass (class in dedalus.tools.cache)
CachedFunction (class in dedalus.tools.cache)
CachedMethod (class in dedalus.tools.cache)
CachedMultiClass (class in dedalus.tools.dispatch)
cartesian() (PolarCoordinates static method)
(SphericalCoordinates static method)
CartesianCoordinates (class in dedalus.core.coords)
cast() (FutureField static method)
CFL (class in dedalus.extras.flow_tools)
change_layout() (Field method)
change_scales() (Field method)
(LockedField method)
Chebyshev (in module dedalus.core.basis)
ChebyshevT() (in module dedalus.core.basis)
ChebyshevU() (in module dedalus.core.basis)
ChebyshevV() (in module dedalus.core.basis)
check_bounds() (Coordinate method)
(SphericalCoordinates method)
check_condition() (Subproblem method)
check_conditions() (AdvectiveCFL method)
(Component method)
(Convert method)
(Future method)
(GeneralFunction method)
(Skew method)
(Trace method)
(TransposeComponents method)
(UnaryGridFunction method)
check_schedule() (Handler method)
chunk_shape() (Domain method)
(SphereBasis method)
chunked_rng() (in module dedalus.tools.random_arrays)
ChunkedRandomArray (class in dedalus.tools.random_arrays)
close_file() (H5FileHandlerBase method)
(H5GatherFileHandler method)
(H5ParallelFileHandler method)
(H5VirtualFileHandler method)
cmax (CNAB1 attribute)
(CNAB2 attribute)
(SBDF1 attribute)
(SBDF2 attribute)
(SBDF3 attribute)
(SBDF4 attribute)
CNAB1 (class in dedalus.libraries.dedalus_sphere.timesteppers)
CNAB2 (class in dedalus.libraries.dedalus_sphere.timesteppers)
Codomain (class in dedalus.libraries.dedalus_sphere.operators)
codomain (Operator property)
Coeff() (in module dedalus.core.operators)
coeff_shape() (Domain method)
(Subproblem method)
(Subsystem method)
coeff_size() (Subproblem method)
(Subsystem method)
coeff_slices() (Subproblem method)
(Subsystem method)
coefficient_connection() (in module dedalus.libraries.dedalus_sphere.jacobi)
CoeffSystem (class in dedalus.core.system)
comm (in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_transforms)
(in module test_spherical3d_arithmetic_parallel)
ComplexFFT (class in dedalus.core.transforms)
ComplexFourier (class in dedalus.core.basis)
ComplexFourierMMT (class in dedalus.core.transforms)
ComplexFourierTransform (class in dedalus.core.transforms)
Component (class in dedalus.core.operators)
compute_cfl_frequency() (AdvectiveCFL method)
compute_coefficients() (CNAB1 class method)
(CNAB2 class method)
(SBDF1 class method)
(SBDF2 class method)
(SBDF3 class method)
(SBDF4 class method)
compute_dt() (CFL method)
compute_timestep() (CFL method)
config (in module dedalus.tools.config)
(SolverBase attribute)
(Woodbury attribute)
constant() (Domain method)
constant_mode_value (SphereBasis attribute)
constant_mode_value() (AnnulusBasis method)
(DiskBasis method)
conversion_matrix() (AnnulusBasis method)
(DiskBasis method)
(in module dedalus.tools.jacobi)
Convert (class in dedalus.core.operators)
Coordinate (class in dedalus.core.coords)
copy() (Field method)
copyto() (in module dedalus.tools.array)
CosineMMT (class in dedalus.core.transforms)
CosineTransform (class in dedalus.core.transforms)
count (Leaf attribute)
cov() (in module dedalus.tests)
create_current_file() (H5FileHandlerBase method)
(H5ParallelFileHandler method)
(H5VirtualFileHandler method)
create_stats() (ProfileWrapper method)
create_task_dataset() (H5FileHandlerBase method)
(H5ParallelFileHandler method)
(H5VirtualFileHandler method)
cross_grid() (Ball method)
CrossProduct (class in dedalus.core.arithmetic)
cs_by_axis() (Distributor method)
csr_matvec() (in module dedalus.tools.array)
csr_matvecs() (in module dedalus.tools.array)
Curl (class in dedalus.core.operators)
curl() (Ball method)
current_file (H5FileHandlerBase property)
current_path (H5FileHandlerBase property)
current_process_file (H5VirtualFileHandler property)
curvilinear (CartesianCoordinates attribute)
(Coordinate attribute)
curvilinear() (DirectProduct method)
D
dealias (in module dedalus.tests.test_polar_ncc)
dealias() (Domain method)
dealias_range (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_fourier_operators)
(in module dedalus.tests.test_grid_operators)
(in module dedalus.tests.test_jacobi_operators)
(in module dedalus.tests.test_output)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
(in module dedalus.tests.test_sphere_ncc)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
(in module test_spherical3d_arithmetic_parallel)
decrement_layout() (TensorField_3D method)
dedalus
module
dedalus.__main__
module
dedalus.core
module
dedalus.core.arithmetic
module
dedalus.core.basis
module
dedalus.core.coords
module
dedalus.core.distributor
module
dedalus.core.domain
module
dedalus.core.evaluator
module
dedalus.core.field
module
dedalus.core.future
module
dedalus.core.operators
module
dedalus.core.problems
module
dedalus.core.solvers
module
dedalus.core.subsystems
module
dedalus.core.system
module
dedalus.core.timesteppers
module
dedalus.core.transforms
module
dedalus.extras
module
dedalus.extras.flow_tools
module
dedalus.extras.plot_tools
module
dedalus.libraries
module
dedalus.libraries.dedalus_sphere
module
dedalus.libraries.dedalus_sphere.annulus
module
dedalus.libraries.dedalus_sphere.ball_wrapper
module
dedalus.libraries.dedalus_sphere.clenshaw
module
dedalus.libraries.dedalus_sphere.jacobi
module
dedalus.libraries.dedalus_sphere.old_intertwiner
module
dedalus.libraries.dedalus_sphere.operators
module
dedalus.libraries.dedalus_sphere.shell
module
dedalus.libraries.dedalus_sphere.sphere
module
dedalus.libraries.dedalus_sphere.sphere_wrapper
module
dedalus.libraries.dedalus_sphere.spin_operators
module
dedalus.libraries.dedalus_sphere.timesteppers
module
dedalus.libraries.dedalus_sphere.tuple_tools
module
dedalus.libraries.dedalus_sphere.zernike
module
dedalus.libraries.fftw
module
dedalus.libraries.matsolvers
module
dedalus.public
module
dedalus.tests
module
dedalus.tests.ball_diffusion_analytical_eigenvalues
module
dedalus.tests.test_cartesian_ncc
module
dedalus.tests.test_cartesian_operators
module
dedalus.tests.test_cfl
module
dedalus.tests.test_clenshaw
module
dedalus.tests.test_cylinder_calculus
module
dedalus.tests.test_cylinder_ncc
module
dedalus.tests.test_cylinder_operators
module
dedalus.tests.test_evp
module
dedalus.tests.test_fourier_operators
module
dedalus.tests.test_grid_operators
module
dedalus.tests.test_ivp
module
dedalus.tests.test_jacobi_operators
module
dedalus.tests.test_lbvp
module
dedalus.tests.test_nlbvp
module
dedalus.tests.test_output
module
dedalus.tests.test_polar_calculus
module
dedalus.tests.test_polar_ncc
module
dedalus.tests.test_polar_operators
module
dedalus.tests.test_sphere_calculus
module
dedalus.tests.test_sphere_ncc
module
dedalus.tests.test_spherical_arithmetic
module
dedalus.tests.test_spherical_calculus
module
dedalus.tests.test_spherical_ncc
module
dedalus.tests.test_spherical_operators
module
dedalus.tests.test_transforms
module
dedalus.tools
module
dedalus.tools.array
module
dedalus.tools.cache
module
dedalus.tools.clenshaw
module
dedalus.tools.config
module
dedalus.tools.dispatch
module
dedalus.tools.exceptions
module
dedalus.tools.general
module
dedalus.tools.jacobi
module
dedalus.tools.logging
module
dedalus.tools.parallel
module
dedalus.tools.parsing
module
dedalus.tools.plot_op
module
dedalus.tools.post
module
dedalus.tools.progress
module
dedalus.tools.random_arrays
module
dedalus_h5_to_xarray() (in module dedalus.tools.post)
DedalusXarrayBackend (class in dedalus.tools.post)
default_dct (Jacobi attribute)
default_library (BallBasis attribute)
(DiskBasis attribute)
(Jacobi attribute)
(SphereBasis attribute)
default_nonconst_groups (Coordinate attribute)
(PolarCoordinates attribute)
(S2Coordinates attribute)
(SphericalCoordinates attribute)
default_nonconst_groups() (DirectProduct method)
(Distributor method)
DeferredTuple (class in dedalus.libraries.dedalus_sphere.clenshaw)
(class in dedalus.tools.general)
DenseInverse (class in dedalus.libraries.matsolvers)
DenseSolver (class in dedalus.libraries.matsolvers)
DependentOperatorError
derivative_basis() (Jacobi method)
DictionaryHandler (class in dedalus.core.evaluator)
Differentiate (class in dedalus.core.operators)
differentiation_matrix() (in module dedalus.tools.jacobi)
dim (Coordinate attribute)
(PolarCoordinates attribute)
(S2Coordinates attribute)
(SphereBasis attribute)
(SphericalCoordinates attribute)
dim() (Domain method)
dimension (TensorOperator property)
(ZernikeOperator property)
dims (SphereBasis attribute)
DimWrapper (class in dedalus.extras.plot_tools)
DirectProduct (class in dedalus.core.coords)
disk_azimuth_coupling_range (in module dedalus.tests.test_lbvp)
DiskBasis (class in dedalus.core.basis)
DiskRadialTransform (class in dedalus.core.transforms)
dispersion_zeros() (in module dedalus.tests.ball_diffusion_analytical_eigenvalues)
Distributor (class in dedalus.core.distributor)
div() (Ball method)
div_grad() (Ball method)
Divergence (class in dedalus.core.operators)
Domain (class in dedalus.core.domain)
dot (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
dot_grid() (Ball method)
DotProduct (class in dedalus.core.arithmetic)
drop_empty_rows() (in module dedalus.tools.array)
dtype (in module dedalus.libraries.dedalus_sphere.jacobi)
(in module dedalus.libraries.dedalus_sphere.sphere)
(JacobiOperator attribute)
(SphereOperator property)
dtype_range (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_clenshaw)
(in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_fourier_operators)
(in module dedalus.tests.test_grid_operators)
(in module dedalus.tests.test_jacobi_operators)
(in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_output)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
dtypes (in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
(in module dedalus.tests.test_transforms)
dual (in module dedalus.libraries.dedalus_sphere.tuple_tools)
DummySolver (class in dedalus.libraries.matsolvers)
dump_profiles() (InitialValueSolver method)
E
EigenvalueProblem (class in dedalus.core.problems)
eigenvalues() (in module dedalus.tests.ball_diffusion_analytical_eigenvalues)
EigenvalueSolver (class in dedalus.core.solvers)
element (TensorProduct property)
elements_to_groups() (Jacobi method)
(SphereBasis method)
ell_maps() (SphereBasis method)
ell_range (in module dedalus.tests.test_clenshaw)
ell_reversed() (SphereBasis method)
ell_size() (SphereBasis method)
empty() (H5VirtualFileHandler method)
enforce_conditions() (AdvectiveCFL method)
(Component method)
(Convert method)
(Future method)
(GeneralFunction method)
(Skew method)
(Trace method)
(TransposeComponents method)
(UnaryGridFunction method)
enforce_hermitian_symmetry() (InitialValueSolver method)
enumerate_unique_bases() (Domain method)
evaluate() (Future method)
evaluate_group() (Evaluator method)
evaluate_handlers() (Evaluator method)
(InitialValueSolver method)
(LinearBoundaryValueSolver method)
(NonlinearBoundaryValueSolver method)
evaluate_handlers_now() (InitialValueSolver method)
evaluate_scheduled() (Evaluator method)
Evaluator (class in dedalus.core.evaluator)
evolve() (InitialValueSolver method)
EVP (in module dedalus.core.problems)
expand() (Add method)
expand_matrices() (Subproblem method)
expand_pattern() (in module dedalus.tools.array)
expression_matrices() (Add method)
F
FastChebyshevTransform (class in dedalus.core.transforms)
FastCosineTransform (class in dedalus.core.transforms)
FFTPACKRealFFT (class in dedalus.core.transforms)
FFTWBase (class in dedalus.core.transforms)
FFTWComplexFFT (class in dedalus.core.transforms)
FFTWDCT (class in dedalus.core.transforms)
FFTWFastChebyshevTransform (class in dedalus.core.transforms)
FFTWHalfComplexFFT (class in dedalus.core.transforms)
FFTWRealFFT (class in dedalus.core.transforms)
Field (class in dedalus.core.field)
Field() (Distributor method)
field_shape() (Subproblem method)
(Subsystem method)
field_size() (Subproblem method)
(Subsystem method)
field_slices() (Subproblem method)
(Subsystem method)
FieldSystem (class in dedalus.core.system)
FieldWrapper (class in dedalus.extras.plot_tools)
file (in module dedalus.tests)
file_handler (in module dedalus.tools.logging)
FILEHANDLER_MODE_DEFAULT (in module dedalus.core.evaluator)
FILEHANDLER_PARALLEL_DEFAULT (in module dedalus.core.evaluator)
FILEHANDLER_TOUCH_TMPFILE (in module dedalus.core.evaluator)
fill_random() (Field method)
first_axis() (Distributor method)
forbidden_regularity() (in module dedalus.libraries.dedalus_sphere.old_intertwiner)
(Intertwiner method)
forbidden_spin() (in module dedalus.libraries.dedalus_sphere.old_intertwiner)
(Intertwiner method)
format_time() (in module dedalus.tools.progress)
formatter (in module dedalus.tools.logging)
forward() (BallRadialTransform method)
(FFTPACKRealFFT method)
(FFTWComplexFFT method)
(FFTWDCT method)
(FFTWHalfComplexFFT method)
(FFTWRealFFT method)
(NonSeparableTransform method)
(PolynomialTransform method)
(ScipyComplexFFT method)
(ScipyDCT method)
(ScipyRealFFT method)
(SeparableMatrixTransform method)
(SeparableTransform method)
(Sphere method)
forward_angle() (Ball method)
forward_component() (Ball method)
forward_DFT() (in module dedalus.core.transforms)
forward_disk() (in module dedalus.core.transforms)
forward_intertwiner() (SphericalCoordinates method)
forward_matrix() (ComplexFourierMMT method)
(CosineMMT method)
(JacobiMMT method)
(RealFourierMMT method)
(SeparableMatrixTransform method)
forward_reduced() (BallRadialTransform method)
(DiskRadialTransform method)
(SWSHColatitudeTransform method)
forward_spin() (Sphere method)
forward_transform_azimuth() (SphereBasis method)
forward_transform_azimuth_Mmax0() (SphereBasis method)
forward_transform_colatitude() (SphereBasis method)
forward_transform_colatitude_Lmax0() (SphereBasis method)
forward_transform_radius() (AnnulusBasis method)
(BallBasis method)
(DiskBasis method)
(ShellBasis method)
(SphereBasis method)
forward_transform_radius_Nmax0() (DiskBasis method)
forward_vector_intertwiner() (CartesianCoordinates method)
(Coordinate method)
(DirectProduct method)
(PolarCoordinates method)
(S2Coordinates method)
Fourier() (in module dedalus.core.basis)
Frame (class in dedalus.extras.plot_tools)
full_bases() (Domain method)
function (Operator property)
Future (class in dedalus.core.future)
future_type (FutureField attribute)
(FutureLockedField attribute)
FutureField (class in dedalus.core.future)
FutureLockedField (class in dedalus.core.future)
G
GammaCoord() (CrossProduct method)
(DotProduct method)
(Multiply method)
gather() (FieldSystem method)
(Subsystem method)
gather_data() (Field method)
gather_inputs() (Subproblem method)
gather_ncc_coeffs() (Future method)
gather_outputs() (Subproblem method)
GeneralFunction (class in dedalus.core.operators)
get_1d_vertices() (in module dedalus.extras.plot_tools)
get_all_writes() (in module dedalus.tools.post)
get_assigned_sets() (in module dedalus.tools.post)
get_assigned_writes() (in module dedalus.tools.post)
get_axis() (Distributor method)
get_basis() (Domain method)
(Field method)
get_basis_axis() (Distributor method)
get_basis_subaxis() (Domain method)
get_coord() (Domain method)
get_coordsystem() (Distributor method)
get_data_distribution() (H5FileHandlerBase method)
GET_DEALIAS_BEFORE_CONVERTING (in module dedalus.core.transforms)
GET_FFTW_RIGOR (in module dedalus.core.transforms)
get_fields() (Evaluator static method)
get_file() (H5FileHandlerBase method)
get_hdf5_spaces() (H5ParallelFileHandler method)
get_layout_object() (Distributor method)
get_out() (Future method)
get_plane() (in module dedalus.extras.plot_tools)
get_subdata() (CoeffSystem method)
get_transform_object() (Distributor method)
global_colatitude_weights() (SphereBasis method)
global_grid_colatitude() (SphereBasis method)
global_grid_radius() (AnnulusBasis method)
(DiskBasis method)
global_grid_spacing() (SphereBasis method)
global_grids() (SphereBasis method)
global_max() (GlobalArrayReducer method)
global_mean() (GlobalArrayReducer method)
global_min() (GlobalArrayReducer method)
global_radius_weights() (AnnulusBasis method)
(DiskBasis method)
global_shape (Field property)
global_shape() (Domain method)
(SphereBasis method)
GlobalArrayReducer (class in dedalus.extras.flow_tools)
GlobalFlowProperty (class in dedalus.extras.flow_tools)
grad() (Ball method)
(Sphere method)
Gradient (class in dedalus.core.operators)
grid() (Ball method)
Grid() (in module dedalus.core.operators)
grid_average() (GlobalFlowProperty method)
grid_guess() (in module dedalus.libraries.dedalus_sphere.jacobi)
grid_shape() (Domain method)
group_shape (ComplexFourier attribute)
(Jacobi attribute)
(RealFourier attribute)
group_shape() (Domain method)
H
H (RK111 attribute)
(RK222 attribute)
(RK443 attribute)
(RKGFY attribute)
H5FileHandlerBase (class in dedalus.core.evaluator)
H5GatherFileHandler (class in dedalus.core.evaluator)
H5ParallelFileHandler (class in dedalus.core.evaluator)
H5VirtualFileHandler (class in dedalus.core.evaluator)
Handler (class in dedalus.core.evaluator)
harmonics() (in module dedalus.libraries.dedalus_sphere.sphere)
has() (Future method)
high_pass_filter() (Field method)
I
Identity (class in dedalus.libraries.dedalus_sphere.spin_operators)
identity (infinite_csr property)
(Operator property)
identity() (JacobiOperator static method)
(SphereOperator static method)
IdentityTensor() (Distributor method)
inclusion_matrices() (Subproblem method)
increment_layout() (TensorField_3D method)
index2tuple() (in module dedalus.libraries.dedalus_sphere.tuple_tools)
IndexArray (class in dedalus.tools.random_arrays)
indexing (in module dedalus.libraries.dedalus_sphere.spin_operators)
(TensorOperator property)
indices (Trace property)
infinite_csr (class in dedalus.libraries.dedalus_sphere.operators)
InitialValueProblem (class in dedalus.core.problems)
InitialValueSolver (class in dedalus.core.solvers)
int2tuple() (in module dedalus.libraries.dedalus_sphere.tuple_tools)
Integrate (class in dedalus.core.operators)
integration_vector() (in module dedalus.tools.jacobi)
interleave_matrices() (in module dedalus.tools.array)
interleaved_view() (in module dedalus.tools.array)
Interpolate (class in dedalus.core.operators)
interpolation() (AnnulusBasis method)
(DiskBasis method)
Intertwiner (class in dedalus.libraries.dedalus_sphere.spin_operators)
is_complex_dtype() (in module dedalus.tools.general)
is_real_dtype() (in module dedalus.tools.general)
is_scalar (Field property)
IVP (in module dedalus.core.problems)
J
Jacobi (class in dedalus.core.basis)
jacobi_conversion() (AnnulusBasis method)
jacobi_matrix() (in module dedalus.libraries.dedalus_sphere.clenshaw)
(in module dedalus.tools.jacobi)
Jacobi_matrix() (Jacobi method)
jacobi_range (in module dedalus.tests.test_transforms)
jacobi_recursion() (in module dedalus.libraries.dedalus_sphere.clenshaw)
(in module dedalus.tools.clenshaw)
JacobiCodomain (class in dedalus.libraries.dedalus_sphere.jacobi)
JacobiMMT (class in dedalus.core.transforms)
JacobiOperator (class in dedalus.libraries.dedalus_sphere.jacobi)
JacobiTransform (class in dedalus.core.transforms)
K
k() (Intertwiner method)
(SphereBasis static method)
k_out_comp() (in module dedalus.tests.test_spherical_ncc)
k_range (in module dedalus.tests.test_clenshaw)
(in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_jacobi_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
k_vector() (SphereBasis method)
kron() (in module dedalus.tools.array)
kronecker_clenshaw() (in module dedalus.tools.clenshaw)
L
L (Intertwiner property)
L() (SphereOperator static method)
L_min() (Sphere method)
label (DimWrapper property)
lambdify_functions() (in module dedalus.tools.parsing)
Laplacian (class in dedalus.core.operators)
last_axis() (Distributor method)
latitude_basis() (SphereBasis method)
layout (TensorField property)
layout_range (in module dedalus.tests.test_output)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
LBVP (in module dedalus.core.problems)
Leaf (class in dedalus.tools.plot_op)
left_permutation() (in module dedalus.core.subsystems)
Legendre() (in module dedalus.core.basis)
length (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
length_range (in module dedalus.tests.test_transforms)
Lift (class in dedalus.core.operators)
LiftTau() (in module dedalus.core.operators)
LinearBoundaryValueProblem (class in dedalus.core.problems)
LinearBoundaryValueSolver (class in dedalus.core.solvers)
load_from_global_grid_data() (Field method)
load_from_hdf5() (Field method)
load_state() (InitialValueSolver method)
load_tasks_to_xarray() (in module dedalus.tools.post)
local_colatitude_weights() (SphereBasis method)
local_elements() (Field method)
local_grid() (Distributor method)
local_grid_colatitude() (SphereBasis method)
local_grid_radius() (AnnulusBasis method)
(DiskBasis method)
local_grid_spacing() (SphereBasis method)
local_grids() (Distributor method)
(SphereBasis method)
local_modes() (Distributor method)
local_radius_weights() (AnnulusBasis method)
(DiskBasis method)
lock_axis_to_grid() (LockedField method)
lock_to_layouts() (LockedField method)
LockedField (class in dedalus.core.field)
log_progress() (in module dedalus.tools.progress)
log_stats() (InitialValueSolver method)
logger (in module dedalus)
(in module dedalus.core.domain)
(in module dedalus.core.evaluator)
(in module dedalus.core.future)
(in module dedalus.core.solvers)
(in module dedalus.core.subsystems)
(in module dedalus.core.transforms)
(in module dedalus.extras.flow_tools)
(in module dedalus.libraries.dedalus_sphere.ball_wrapper)
(in module dedalus.tools.post)
low_pass_filter() (Field method)
Lx (in module dedalus.tests.test_cartesian_operators)
Ly (in module dedalus.tests.test_cartesian_operators)
Lz (in module dedalus.tests.test_cartesian_operators)
M
M() (SphereOperator static method)
m_maps() (SphereBasis method)
mass() (in module dedalus.libraries.dedalus_sphere.jacobi)
(in module dedalus.libraries.dedalus_sphere.zernike)
(in module dedalus.tools.jacobi)
matrices (EigenvalueSolver attribute)
(InitialValueSolver attribute)
(LinearBoundaryValueSolver attribute)
(NonlinearBoundaryValueSolver attribute)
matrix_clenshaw() (in module dedalus.libraries.dedalus_sphere.clenshaw)
(in module dedalus.tools.clenshaw)
matrix_coupling() (Add method)
(Component method)
(Skew method)
(TimeDerivative method)
(Trace method)
(TransposeComponents method)
matrix_dependence() (Add method)
(Component method)
(Skew method)
(SphereBasis method)
(TimeDerivative method)
(Trace method)
(TransposeComponents method)
matsolver_default (EigenvalueSolver attribute)
(InitialValueSolver attribute)
(LinearBoundaryValueSolver attribute)
(NonlinearBoundaryValueSolver attribute)
matsolvers (in module dedalus.libraries.matsolvers)
max() (GlobalFlowProperty method)
measure() (in module dedalus.libraries.dedalus_sphere.jacobi)
merge_analysis() (in module dedalus.tools.post)
merge_data() (in module dedalus.tools.post)
merge_distributed_set() (in module dedalus.tools.post)
merge_setup() (in module dedalus.tools.post)
merge_task() (H5VirtualFileHandler static method)
merge_virtual (in module dedalus.tools.post)
merge_virtual_analysis() (in module dedalus.tools.post)
merge_virtual_file() (in module dedalus.tools.post)
meridional_basis (ShellBasis property)
Metric (class in dedalus.libraries.dedalus_sphere.spin_operators)
min() (GlobalFlowProperty method)
min_degree() (in module dedalus.libraries.dedalus_sphere.zernike)
mode_dependence() (Domain method)
module
dedalus
dedalus.__main__
dedalus.core
dedalus.core.arithmetic
dedalus.core.basis
dedalus.core.coords
dedalus.core.distributor
dedalus.core.domain
dedalus.core.evaluator
dedalus.core.field
dedalus.core.future
dedalus.core.operators
dedalus.core.problems
dedalus.core.solvers
dedalus.core.subsystems
dedalus.core.system
dedalus.core.timesteppers
dedalus.core.transforms
dedalus.extras
dedalus.extras.flow_tools
dedalus.extras.plot_tools
dedalus.libraries
dedalus.libraries.dedalus_sphere
dedalus.libraries.dedalus_sphere.annulus
dedalus.libraries.dedalus_sphere.ball_wrapper
dedalus.libraries.dedalus_sphere.clenshaw
dedalus.libraries.dedalus_sphere.jacobi
dedalus.libraries.dedalus_sphere.old_intertwiner
dedalus.libraries.dedalus_sphere.operators
dedalus.libraries.dedalus_sphere.shell
dedalus.libraries.dedalus_sphere.sphere
dedalus.libraries.dedalus_sphere.sphere_wrapper
dedalus.libraries.dedalus_sphere.spin_operators
dedalus.libraries.dedalus_sphere.timesteppers
dedalus.libraries.dedalus_sphere.tuple_tools
dedalus.libraries.dedalus_sphere.zernike
dedalus.libraries.fftw
dedalus.libraries.matsolvers
dedalus.public
dedalus.tests
dedalus.tests.ball_diffusion_analytical_eigenvalues
dedalus.tests.test_cartesian_ncc
dedalus.tests.test_cartesian_operators
dedalus.tests.test_cfl
dedalus.tests.test_clenshaw
dedalus.tests.test_cylinder_calculus
dedalus.tests.test_cylinder_ncc
dedalus.tests.test_cylinder_operators
dedalus.tests.test_evp
dedalus.tests.test_fourier_operators
dedalus.tests.test_grid_operators
dedalus.tests.test_ivp
dedalus.tests.test_jacobi_operators
dedalus.tests.test_lbvp
dedalus.tests.test_nlbvp
dedalus.tests.test_output
dedalus.tests.test_polar_calculus
dedalus.tests.test_polar_ncc
dedalus.tests.test_polar_operators
dedalus.tests.test_sphere_calculus
dedalus.tests.test_sphere_ncc
dedalus.tests.test_spherical_arithmetic
dedalus.tests.test_spherical_calculus
dedalus.tests.test_spherical_ncc
dedalus.tests.test_spherical_operators
dedalus.tests.test_transforms
dedalus.tools
dedalus.tools.array
dedalus.tools.cache
dedalus.tools.clenshaw
dedalus.tools.config
dedalus.tools.dispatch
dedalus.tools.exceptions
dedalus.tools.general
dedalus.tools.jacobi
dedalus.tools.logging
dedalus.tools.parallel
dedalus.tools.parsing
dedalus.tools.plot_op
dedalus.tools.post
dedalus.tools.progress
dedalus.tools.random_arrays
test_jacobi
test_output_parallel
test_spherical3d_arithmetic_parallel
move_single_axis() (in module dedalus.tools.array)
MPI_RANK (in module dedalus.tools.logging)
(in module dedalus.tools.post)
MPI_SIZE (in module dedalus.tools.logging)
(in module dedalus.tools.post)
MulCosine (class in dedalus.core.operators)
MultiClass (class in dedalus.tools.dispatch)
MultiFigure (class in dedalus.extras.plot_tools)
Multiply (class in dedalus.core.arithmetic)
MultistepIMEX (class in dedalus.libraries.dedalus_sphere.timesteppers)
N
N_min() (Ball method)
N_range (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_clenshaw)
(in module dedalus.tests.test_fourier_operators)
(in module dedalus.tests.test_grid_operators)
(in module dedalus.tests.test_jacobi_operators)
(in module dedalus.tests.test_transforms)
(in module test_jacobi)
name (Add attribute)
(AdvectiveCFL attribute)
(AngularComponent attribute)
(Average attribute)
(AzimuthalComponent attribute)
(Component attribute)
(Convert attribute)
(CrossProduct attribute)
(Curl attribute)
(Differentiate attribute)
(Divergence attribute)
(DotProduct attribute)
(Gradient attribute)
(Integrate attribute)
(Interpolate attribute)
(Laplacian attribute)
(Lift attribute)
(MulCosine attribute)
(Multiply attribute)
(RadialComponent attribute)
(Skew attribute)
(SphericalEllProduct attribute)
(TimeDerivative attribute)
(Trace attribute)
(TransposeComponents attribute)
(UnaryGridFunction property)
native_bounds (Jacobi attribute)
natural_sort() (in module dedalus.tools.general)
ncc_cutoff (in module dedalus.tests.test_spherical_ncc)
ncc_matrix() (Ball method)
(in module dedalus.libraries.dedalus_sphere.clenshaw)
ncc_method (DotProduct attribute)
new_operand() (AdvectiveCFL method)
(AngularComponent method)
(AzimuthalComponent method)
(Convert method)
(Curl method)
(Differentiate method)
(Divergence method)
(Gradient method)
(Integrate method)
(Interpolate method)
(Laplacian method)
(Lift method)
(MulCosine method)
(RadialComponent method)
(Skew method)
(SphericalEllProduct method)
(Trace method)
(TransposeComponents method)
new_operands() (Add method)
(CrossProduct method)
(DotProduct method)
(Multiply method)
(UnaryGridFunction method)
newton_iteration() (NonlinearBoundaryValueSolver method)
nkron() (in module dedalus.tools.array)
NLBVP (in module dedalus.core.problems)
Node (class in dedalus.tools.plot_op)
nonconstant() (Domain method)
NonlinearBoundaryValueProblem (class in dedalus.core.problems)
NonlinearBoundaryValueSolver (class in dedalus.core.solvers)
NonlinearOperatorError
NonSeparableTransform (class in dedalus.core.transforms)
norm2() (in module dedalus.tests.test_spherical_ncc)
norm_ratio() (in module dedalus.libraries.dedalus_sphere.jacobi)
normalised (JacobiOperator property)
normalize() (Field method)
Nphi_range (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
(in module dedalus.tests.test_sphere_ncc)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
,
[4]
(in module test_spherical3d_arithmetic_parallel)
Nr_range (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
(in module test_spherical3d_arithmetic_parallel)
Ntheta_range (in module dedalus.tests.test_sphere_calculus)
(in module dedalus.tests.test_sphere_ncc)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
(in module test_spherical3d_arithmetic_parallel)
number() (JacobiOperator static method)
Nz_range (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_transforms)
O
OLD_CSR_MATVECS (in module dedalus.tools.array)
op() (Ball method)
(Sphere method)
open_dataset() (DedalusXarrayBackend method)
open_file() (H5FileHandlerBase method)
(H5GatherFileHandler method)
(H5ParallelFileHandler method)
(H5VirtualFileHandler method)
operate() (AdvectiveCFL method)
(Convert method)
(DotProduct method)
(Future method)
(GeneralFunction method)
(Trace method)
(UnaryGridFunction method)
operate_left_handed() (CrossProduct method)
operate_right_handed() (CrossProduct method)
Operator (class in dedalus.libraries.dedalus_sphere.operators)
operator() (in module dedalus.libraries.dedalus_sphere.annulus)
(in module dedalus.libraries.dedalus_sphere.jacobi)
(in module dedalus.libraries.dedalus_sphere.shell)
(in module dedalus.libraries.dedalus_sphere.sphere)
(in module dedalus.libraries.dedalus_sphere.zernike)
operator_matrix() (AnnulusBasis method)
(DiskBasis method)
(SphereBasis method)
OrderedSet (class in dedalus.tools.general)
oscillate() (in module dedalus.tools.general)
Output (Codomain property)
(Operator property)
output_dtype (in module dedalus.tools.jacobi)
P
pack() (Ball method)
pad() (in module dedalus.tools.plot_op)
pad_limits() (in module dedalus.extras.plot_tools)
parallel_mkdir() (in module dedalus.tools.parallel)
PARALLEL_PROFILE_DEFAULT (in module dedalus.core.solvers)
parallel_range (in module dedalus.tests.test_output)
parity() (JacobiOperator static method)
(SphereOperator static method)
parse() (FutureField static method)
perm_matrix() (in module dedalus.tools.array)
PERMC_SPEC (in module dedalus.libraries.dedalus_sphere.timesteppers)
permc_spec (SuperluColamdFactorized attribute)
(SuperluColamdFactorizedTranspose attribute)
(SuperluColamdSpsolve attribute)
(SuperluNaturalFactorized attribute)
(SuperluNaturalFactorizedTranspose attribute)
(SuperluNaturalSpsolve attribute)
permutation (Transpose property)
permute_axis() (in module dedalus.tools.array)
plot_bot() (in module dedalus.extras.plot_tools)
plot_bot_2d() (in module dedalus.extras.plot_tools)
plot_bot_3d() (in module dedalus.extras.plot_tools)
plot_operator() (in module dedalus.tools.plot_op)
PolarCoordinates (class in dedalus.core.coords)
polynomials() (in module dedalus.libraries.dedalus_sphere.jacobi)
(in module dedalus.libraries.dedalus_sphere.zernike)
PolynomialTransform (class in dedalus.core.transforms)
prep_nccs() (Future method)
print_progress() (in module dedalus.tools.progress)
print_subproblem_ranks() (EigenvalueSolver method)
(InitialValueSolver method)
(LinearBoundaryValueSolver method)
(NonlinearBoundaryValueSolver method)
proceed (InitialValueSolver property)
process() (DictionaryHandler method)
(H5FileHandlerBase method)
(SystemHandler method)
product_matrix() (ComplexFourier method)
(Jacobi method)
(RealFourier method)
PROFILE_DEFAULT (in module dedalus.core.solvers)
PROFILE_DIRECTORY (in module dedalus.core.solvers)
ProfileWrapper (class in dedalus.tools.parallel)
Q
quad_mesh() (in module dedalus.extras.plot_tools)
quadrature() (in module dedalus.libraries.dedalus_sphere.annulus)
(in module dedalus.libraries.dedalus_sphere.jacobi)
(in module dedalus.libraries.dedalus_sphere.sphere)
(in module dedalus.libraries.dedalus_sphere.zernike)
R
radial_backward() (Ball method)
radial_basis() (AnnulusBasis method)
(DiskBasis method)
radial_forward() (Ball method)
radial_matrix() (MulCosine method)
radial_transform_factor() (AnnulusBasis method)
RadialComponent (class in dedalus.core.operators)
radii_annulus (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_polar_operators)
radii_range (in module dedalus.tests.test_transforms)
radii_shell (in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module test_spherical3d_arithmetic_parallel)
radius (in module dedalus.tests.test_sphere_calculus)
(SphereOperator property)
(ZernikeOperator property)
radius_ball (in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_spherical_calculus)
(in module dedalus.tests.test_spherical_ncc)
(in module dedalus.tests.test_spherical_operators)
(in module test_spherical3d_arithmetic_parallel)
radius_disk (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_polar_operators)
radius_multiplication_matrix() (DiskBasis method)
radius_range (in module dedalus.tests.test_spherical_arithmetic)
(in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
(in module test_spherical3d_arithmetic_parallel)
range() (TensorOperator method)
rank() (Ball method)
rank_range (in module dedalus.tests.test_transforms)
,
[1]
,
[2]
,
[3]
RealFFT (class in dedalus.core.transforms)
RealFourier (class in dedalus.core.basis)
RealFourierMMT (class in dedalus.core.transforms)
RealFourierTransform (class in dedalus.core.transforms)
reduce_array() (in module dedalus.core.transforms)
reduce_scalar() (GlobalArrayReducer method)
reduced_view_3() (in module dedalus.core.transforms)
reduced_view_4() (in module dedalus.core.transforms)
reduced_view_5() (in module dedalus.core.transforms)
reg_ordering (SphericalCoordinates attribute)
register_transform() (in module dedalus.core.transforms)
regtotal_range (in module dedalus.tests.test_clenshaw)
regularity2spinMap() (in module dedalus.libraries.dedalus_sphere.old_intertwiner)
reinitialize() (Add method)
(UnaryGridFunction method)
remedy_scales() (Distributor method)
remove (in module dedalus.libraries.dedalus_sphere.tuple_tools)
repack() (FFTWHalfComplexFFT method)
repack_rescale() (RealFFT method)
replace (in module dedalus.libraries.dedalus_sphere.tuple_tools)
replace() (Convert method)
(Future method)
(in module dedalus.tools.general)
require_coeff_space() (Evaluator method)
(Field method)
(TensorField_2D method)
(TensorField_3D method)
require_first_order() (Add method)
require_grid_space() (Evaluator method)
(Field method)
(TensorField_2D method)
(TensorField_3D method)
require_layout() (TensorField method)
require_linearity() (Add method)
require_local() (Field method)
reset() (Future method)
reshape_vector() (in module dedalus.tools.array)
resize_coeffs() (ComplexFFT method)
resize_reduced() (PolynomialTransform static method)
resize_rescale_backward() (FastCosineTransform method)
resize_rescale_forward() (FastCosineTransform method)
rev_enumerate() (in module dedalus.tools.general)
right_handed (SphericalCoordinates attribute)
right_permutation() (in module dedalus.core.subsystems)
RK111 (class in dedalus.libraries.dedalus_sphere.timesteppers)
RK222 (class in dedalus.libraries.dedalus_sphere.timesteppers)
RK443 (class in dedalus.libraries.dedalus_sphere.timesteppers)
RKGFY (class in dedalus.libraries.dedalus_sphere.timesteppers)
rng_element() (in module dedalus.tools.random_arrays)
rng_elements() (in module dedalus.tools.random_arrays)
root (in module dedalus.tests)
rootlogger (in module dedalus.tools.logging)
RotateProcesses (class in dedalus.tools.parallel)
RungeKuttaIMEX (class in dedalus.libraries.dedalus_sphere.timesteppers)
S
S() (SphereOperator static method)
S2Coordinates (class in dedalus.core.coords)
SBDF1 (class in dedalus.libraries.dedalus_sphere.timesteppers)
SBDF2 (class in dedalus.libraries.dedalus_sphere.timesteppers)
SBDF3 (class in dedalus.libraries.dedalus_sphere.timesteppers)
SBDF4 (class in dedalus.libraries.dedalus_sphere.timesteppers)
scalar_clenshaw() (in module dedalus.tools.clenshaw)
ScalarField (in module dedalus.core.field)
ScalarField() (Distributor method)
scales_range (in module dedalus.tests.test_output)
scatter() (FieldSystem method)
(Subsystem method)
scatter_inputs() (Subproblem method)
scatter_outputs() (Subproblem method)
scipy_sparse_eigs() (in module dedalus.tools.array)
ScipyBanded (class in dedalus.libraries.matsolvers)
ScipyComplexFFT (class in dedalus.core.transforms)
ScipyDCT (class in dedalus.core.transforms)
ScipyDenseLU (class in dedalus.libraries.matsolvers)
ScipyFastChebyshevTransform (class in dedalus.core.transforms)
ScipyRealFFT (class in dedalus.core.transforms)
self() (Transpose method)
SeparableMatrixTransform (class in dedalus.core.transforms)
SeparableTransform (class in dedalus.core.transforms)
serialize_call() (in module dedalus.tools.cache)
set_global_data() (Field method)
set_local_data() (Field method)
set_position() (Tree method)
set_state() (EigenvalueSolver method)
setup_file() (H5FileHandlerBase method)
setup_process_file() (H5VirtualFileHandler method)
shape (FieldWrapper property)
shape() (Subproblem method)
ShellBasis (class in dedalus.core.basis)
ShellCodomain (class in dedalus.libraries.dedalus_sphere.shell)
sim_time (InitialValueSolver property)
sine_multiplication_matrix() (SphereBasis method)
size() (Subproblem method)
Skew (class in dedalus.core.operators)
SkipDispatchException
solve() (BandedQR method)
(DenseInverse method)
(DummySolver method)
(LinearBoundaryValueSolver method)
(ScipyBanded method)
(ScipyDenseLU method)
(SolverBase method)
(SparseInverse method)
(SPQR_solve method)
(UmfpackFactorized method)
(UmfpackSpsolve method)
(Woodbury method)
solve_dense() (EigenvalueSolver method)
solve_H() (SolverBase method)
solve_sparse() (EigenvalueSolver method)
solve_upper_sparse() (in module dedalus.tools.array)
solver_class (EigenvalueProblem attribute)
(InitialValueProblem attribute)
(LinearBoundaryValueProblem attribute)
(NonlinearBoundaryValueProblem attribute)
SolverBase (class in dedalus.core.solvers)
(class in dedalus.libraries.matsolvers)
sparse (BandedSolver attribute)
(DenseSolver attribute)
(SparseSolver attribute)
sparse_allclose() (in module dedalus.tools.array)
sparse_block_diag() (in module dedalus.tools.array)
sparse_to_banded() (BandedSolver static method)
SparseInverse (class in dedalus.libraries.matsolvers)
SparseSolver (class in dedalus.libraries.matsolvers)
Sphere (class in dedalus.libraries.dedalus_sphere.sphere_wrapper)
SphereBasis (class in dedalus.core.basis)
SphereCodomain (class in dedalus.libraries.dedalus_sphere.sphere)
SphereOperator (class in dedalus.libraries.dedalus_sphere.sphere)
SphericalCoordinates (class in dedalus.core.coords)
SphericalEllProduct (class in dedalus.core.operators)
spin2Jacobi() (in module dedalus.libraries.dedalus_sphere.sphere)
spin_ordering (PolarCoordinates attribute)
(S2Coordinates attribute)
(SphericalCoordinates attribute)
spinindex_out() (MulCosine method)
spins() (Ball method)
split() (Add method)
split_call() (in module dedalus.tools.parsing)
SPLIT_CSR_MATVECS (in module dedalus.tools.array)
split_equation() (in module dedalus.tools.parsing)
splu_inverse() (in module dedalus.tools.array)
SPQR_solve (class in dedalus.libraries.matsolvers)
square (infinite_csr property)
stages (RK111 attribute)
(RK222 attribute)
(RK443 attribute)
(RKGFY attribute)
staticmethods() (JacobiOperator method)
stdout_handler (in module dedalus.tools.logging)
step() (InitialValueSolver method)
(MultistepIMEX method)
(RungeKuttaIMEX method)
store_last (Future attribute)
STORE_LAST_DEFAULT (in module dedalus.core.future)
STORE_LU (in module dedalus.libraries.dedalus_sphere.timesteppers)
STORE_LU_TRANSFORM (in module dedalus.libraries.dedalus_sphere.ball_wrapper)
STORE_OUTPUTS (in module dedalus.core.future)
sub_cs() (SphericalCoordinates method)
subaxis_by_cs() (DirectProduct method)
subaxis_dependence (AnnulusBasis attribute)
(DiskBasis attribute)
(SphereBasis attribute)
Subproblem (class in dedalus.core.subsystems)
subspace_matrix() (Convert method)
(Interpolate method)
substitute_basis() (Domain method)
Subsystem (class in dedalus.core.subsystems)
sum_ (in module dedalus.libraries.dedalus_sphere.tuple_tools)
SuperluColamdFactorized (class in dedalus.libraries.matsolvers)
SuperluColamdFactorizedTranspose (class in dedalus.libraries.matsolvers)
SuperluColamdSpsolve (class in dedalus.libraries.matsolvers)
SuperluNaturalFactorized (class in dedalus.libraries.matsolvers)
SuperluNaturalFactorizedTranspose (class in dedalus.libraries.matsolvers)
SuperluNaturalSpsolve (class in dedalus.libraries.matsolvers)
supported (UnaryGridFunction attribute)
SWSHColatitudeTransform (class in dedalus.core.transforms)
sym_diff() (Add method)
(UnaryGridFunction method)
SymbolicParsingError
Sync (class in dedalus.tools.parallel)
SystemHandler (class in dedalus.core.evaluator)
T
T (infinite_csr property)
(Operator property)
tensor_index() (Sphere method)
TensorCodomain (class in dedalus.libraries.dedalus_sphere.spin_operators)
TensorField (class in dedalus.libraries.dedalus_sphere.ball_wrapper)
TensorField() (Distributor method)
(in module dedalus.core.field)
TensorField_2D (class in dedalus.libraries.dedalus_sphere.ball_wrapper)
TensorField_3D (class in dedalus.libraries.dedalus_sphere.ball_wrapper)
TensorOperator (class in dedalus.libraries.dedalus_sphere.spin_operators)
TensorProduct (class in dedalus.libraries.dedalus_sphere.spin_operators)
test() (in module dedalus.tests)
test_2d_curl_explicit_scalar() (in module dedalus.tests.test_cartesian_operators)
test_2d_curl_explicit_vector() (in module dedalus.tests.test_cartesian_operators)
test_algebraic() (in module dedalus.tests.test_lbvp)
test_angular_component_tensor() (in module dedalus.tests.test_spherical_operators)
test_angular_component_vector() (in module dedalus.tests.test_spherical_operators)
test_Ap_Bp_commutation() (in module test_jacobi)
test_Ap_loop() (in module test_jacobi)
test_App_Bpp_commutation() (in module test_jacobi)
test_average_scalar() (in module dedalus.tests.test_cylinder_operators)
test_azimuthal_average_scalar() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_azimuthal_component_tensor() (in module dedalus.tests.test_polar_operators)
test_azimuthal_component_vector() (in module dedalus.tests.test_polar_operators)
test_backward_forward_loop() (in module test_jacobi)
test_ball_bessel_eigenfunction() (in module dedalus.tests.test_evp)
test_ball_clenshaw_scalar() (in module dedalus.tests.test_clenshaw)
test_ball_clenshaw_vector() (in module dedalus.tests.test_clenshaw)
test_ball_diffusion() (in module dedalus.tests.test_evp)
test_ball_radial_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_ball_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_Bp_loop() (in module test_jacobi)
test_cartesian_output() (in module dedalus.tests.test_output)
(in module test_output_parallel)
test_cartesian_output_merged() (in module test_output_parallel)
test_cartesian_output_merged_virtual() (in module test_output_parallel)
test_cartesian_output_virtual() (in module test_output_parallel)
test_CF_CF_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_CF_J_1d_vector_roundtrip() (in module dedalus.tests.test_transforms)
test_CF_J_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_CF_J_vector_roundtrip() (in module dedalus.tests.test_transforms)
test_CF_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_cfl_annulus() (in module dedalus.tests.test_cfl)
test_cfl_ball() (in module dedalus.tests.test_cfl)
test_cfl_chebyshev() (in module dedalus.tests.test_cfl)
test_cfl_disk() (in module dedalus.tests.test_cfl)
test_cfl_fourier() (in module dedalus.tests.test_cfl)
test_cfl_fourier_chebyshev() (in module dedalus.tests.test_cfl)
test_cfl_shell() (in module dedalus.tests.test_cfl)
test_cfl_sphere() (in module dedalus.tests.test_cfl)
test_chebyshev_libraries_backward() (in module dedalus.tests.test_transforms)
test_chebyshev_libraries_forward() (in module dedalus.tests.test_transforms)
test_convert_constant_scalar() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_convert_constant_scalar_explicit() (in module dedalus.tests.test_sphere_calculus)
test_convert_constant_tensor() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_convert_scalar() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_convert_vector() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_cosine_explicit() (in module dedalus.tests.test_sphere_calculus)
test_cosine_implicit() (in module dedalus.tests.test_sphere_calculus)
test_cross_product() (in module dedalus.tests.test_spherical_arithmetic)
test_curl_explicit() (in module dedalus.tests.test_cartesian_operators)
test_curl_implicit_FFC() (in module dedalus.tests.test_cartesian_operators)
test_curl_implicit_FFF() (in module dedalus.tests.test_cartesian_operators)
test_curl_vector() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_cylinder_axial_vector_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_cylinder_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_disk_bessel_zeros() (in module dedalus.tests.test_evp)
test_divergence_cleaning() (in module dedalus.tests.test_sphere_calculus)
test_divergence_radial_vector() (in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_divergence_tensor() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
test_divergence_vector() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_dot_product_tensor_vector() (in module dedalus.tests.test_spherical_arithmetic)
test_dot_product_vector_vector() (in module dedalus.tests.test_spherical_arithmetic)
test_eval_fourier_jacobi_ncc() (in module dedalus.tests.test_cartesian_ncc)
test_eval_fourier_ncc() (in module dedalus.tests.test_cartesian_ncc)
test_eval_jacobi_ncc() (in module dedalus.tests.test_cartesian_ncc)
test_explicit_trace_tensor() (in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_explicit_transpose_tensor() (in module dedalus.tests.test_spherical_operators)
test_forward_backward_loop() (in module test_jacobi)
test_fourier_average() (in module dedalus.tests.test_fourier_operators)
test_fourier_convert_constant() (in module dedalus.tests.test_fourier_operators)
test_fourier_differentiate() (in module dedalus.tests.test_fourier_operators)
test_fourier_integrate() (in module dedalus.tests.test_fourier_operators)
test_fourier_interpolate() (in module dedalus.tests.test_fourier_operators)
test_full_cfl_fourier_chebyshev() (in module dedalus.tests.test_cfl)
test_gradient_radial_scalar() (in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_gradient_radial_vector() (in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_gradient_scalar() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_gradient_scalar_explicit() (in module dedalus.tests.test_sphere_calculus)
test_gradient_vector() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_heat_ball() (in module dedalus.tests.test_lbvp)
test_heat_ball_cart() (in module dedalus.tests.test_lbvp)
test_heat_ball_nlbvp() (in module dedalus.tests.test_nlbvp)
test_heat_ncc_cos_ball() (in module dedalus.tests.test_lbvp)
test_heat_ncc_shell() (in module dedalus.tests.test_lbvp)
test_heat_periodic() (in module dedalus.tests.test_ivp)
test_heat_shell() (in module dedalus.tests.test_lbvp)
test_implicit_trace_tensor() (in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_implicit_trace_tensor_constant_I() (in module dedalus.tests.test_spherical_operators)
test_implicit_transpose_tensor() (in module dedalus.tests.test_spherical_operators)
test_integrate_scalar() (in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_interpolate_azimuth_scalar() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_interpolate_azimuth_tensor() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_interpolate_azimuth_vector() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_interpolate_colatitude_scalar() (in module dedalus.tests.test_spherical_operators)
test_interpolate_colatitude_tensor() (in module dedalus.tests.test_spherical_operators)
test_interpolate_colatitude_vector() (in module dedalus.tests.test_spherical_operators)
test_interpolate_radius_scalar() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_interpolate_radius_tensor() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_interpolate_radius_vector() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_J_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_jacobi
module
test_jacobi_average() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_convert() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_convert_constant() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_convert_implicit() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_differentiate() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_GeneralFunction_coord() (in module dedalus.tests.test_grid_operators)
test_jacobi_GeneralFunction_field() (in module dedalus.tests.test_grid_operators)
test_jacobi_integrate() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_interpolate() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_lift() (in module dedalus.tests.test_jacobi_operators)
test_jacobi_ufunc_field() (in module dedalus.tests.test_grid_operators)
test_lane_emden_first_order() (in module dedalus.tests.test_nlbvp)
test_lane_emden_floating_amp() (in module dedalus.tests.test_nlbvp)
test_lane_emden_floating_R() (in module dedalus.tests.test_nlbvp)
test_lap_2dncc_vector_shell() (in module dedalus.tests.test_lbvp)
test_lap_meridional_ncc_shell() (in module dedalus.tests.test_lbvp)
test_lap_meridional_radial_ncc_shell() (in module dedalus.tests.test_lbvp)
test_laplace_fourier() (in module dedalus.tests.test_evp)
test_laplace_jacobi() (in module dedalus.tests.test_evp)
test_laplace_jacobi_first_order() (in module dedalus.tests.test_evp)
test_laplacian_radial_scalar() (in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_laplacian_radial_vector() (in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_laplacian_scalar() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_laplacian_scalar_explicit() (in module dedalus.tests.test_sphere_calculus)
test_laplacian_scalar_implicit() (in module dedalus.tests.test_sphere_calculus)
test_laplacian_vector() (in module dedalus.tests.test_cylinder_calculus)
(in module dedalus.tests.test_polar_calculus)
(in module dedalus.tests.test_spherical_calculus)
test_meridional_cross() (in module dedalus.tests.test_spherical_ncc)
test_meridional_dot() (in module dedalus.tests.test_spherical_ncc)
test_meridional_multiply() (in module dedalus.tests.test_spherical_ncc)
test_multiply_number_scalar() (in module dedalus.tests.test_spherical_arithmetic)
test_multiply_scalar_number() (in module dedalus.tests.test_spherical_arithmetic)
test_multiply_scalar_scalar() (in module dedalus.tests.test_spherical_arithmetic)
test_multiply_scalar_vector() (in module dedalus.tests.test_spherical_arithmetic)
test_multiply_tensor_tensor() (in module dedalus.tests.test_spherical_arithmetic)
test_multiply_vector_tensor() (in module dedalus.tests.test_spherical_arithmetic)
test_multiply_vector_vector() (in module dedalus.tests.test_spherical_arithmetic)
test_ncc_ball() (in module dedalus.tests.test_lbvp)
test_output_parallel
module
test_poisson_annulus() (in module dedalus.tests.test_lbvp)
test_poisson_disk() (in module dedalus.tests.test_lbvp)
test_poisson_fourier() (in module dedalus.tests.test_lbvp)
test_poisson_jacobi() (in module dedalus.tests.test_lbvp)
test_polar_output() (in module dedalus.tests.test_output)
test_polar_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_polar_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_polar_scalar_roundtrip_mmax0() (in module dedalus.tests.test_transforms)
test_polar_tensor_roundtrip() (in module dedalus.tests.test_transforms)
test_polar_tensor_roundtrip_mmax0() (in module dedalus.tests.test_transforms)
test_polar_vector_roundtrip() (in module dedalus.tests.test_transforms)
test_polar_vector_roundtrip_mmax0() (in module dedalus.tests.test_transforms)
test_radial_component_tensor() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_radial_component_vector() (in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_spherical_operators)
test_radial_cross() (in module dedalus.tests.test_spherical_ncc)
test_radial_dot() (in module dedalus.tests.test_spherical_ncc)
test_radial_multiply() (in module dedalus.tests.test_spherical_ncc)
test_real_fourier_libraries_backward() (in module dedalus.tests.test_transforms)
test_real_fourier_libraries_forward() (in module dedalus.tests.test_transforms)
test_RF_RF_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_RF_scalar_roundtrip() (in module dedalus.tests.test_transforms)
test_S2_radial_scalar_scalar_multiplication() (in module dedalus.tests.test_spherical_arithmetic)
test_S2_radial_vector_scalar_multiplication() (in module dedalus.tests.test_spherical_arithmetic)
test_scalar_prod_scalar() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_scalar_prod_tensor() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_scalar_prod_vector() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_shell_radial_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_shell_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_shell_S2_radial_multiplication() (in module test_spherical3d_arithmetic_parallel)
test_sin_jacobi() (in module dedalus.tests.test_nlbvp)
test_skew_explicit() (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
test_skew_implicit() (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
test_solve_fourier_ncc() (in module dedalus.tests.test_cartesian_ncc)
test_solve_jacobi_ncc() (in module dedalus.tests.test_cartesian_ncc)
test_sphere_average_scalar_explicit() (in module dedalus.tests.test_sphere_calculus)
test_sphere_complex_scalar_backward() (in module dedalus.tests.test_transforms)
test_sphere_complex_scalar_forward() (in module dedalus.tests.test_transforms)
test_sphere_constant_radial_multiplication() (in module test_spherical3d_arithmetic_parallel)
test_sphere_constant_S2_multiplication() (in module test_spherical3d_arithmetic_parallel)
test_sphere_ell_product_scalar() (in module dedalus.tests.test_sphere_calculus)
test_sphere_ell_product_vector() (in module dedalus.tests.test_sphere_calculus)
test_sphere_real_scalar_backward() (in module dedalus.tests.test_transforms)
test_sphere_real_scalar_forward() (in module dedalus.tests.test_transforms)
test_sphere_roundtrip_noise() (in module dedalus.tests.test_transforms)
test_spherical3d_arithmetic_parallel
module
test_spherical_average_scalar() (in module dedalus.tests.test_spherical_operators)
test_spherical_ell_product_scalar() (in module dedalus.tests.test_spherical_operators)
test_spherical_ell_product_vector() (in module dedalus.tests.test_spherical_operators)
test_spherical_GeneralFunction_coord() (in module dedalus.tests.test_grid_operators)
test_spherical_output() (in module dedalus.tests.test_output)
test_spherical_ufunc_field() (in module dedalus.tests.test_grid_operators)
test_spherical_ufunc_operator() (in module dedalus.tests.test_grid_operators)
test_tensor_dot_tensor() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_tensor_dot_vector() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_tensor_prod_scalar() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_trace_explicit() (in module dedalus.tests.test_cartesian_operators)
test_trace_implicit() (in module dedalus.tests.test_cartesian_operators)
test_transpose_explicit() (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
test_transpose_implicit() (in module dedalus.tests.test_cartesian_operators)
(in module dedalus.tests.test_cylinder_operators)
(in module dedalus.tests.test_polar_operators)
(in module dedalus.tests.test_sphere_calculus)
test_vector_diffusion_ball() (in module dedalus.tests.test_ivp)
test_vector_dot_tensor() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_vector_dot_vector() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_vector_heat_shell() (in module dedalus.tests.test_lbvp)
test_vector_poisson_annulus() (in module dedalus.tests.test_lbvp)
test_vector_poisson_disk() (in module dedalus.tests.test_lbvp)
test_vector_prod_scalar() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
test_vector_prod_vector() (in module dedalus.tests.test_cylinder_ncc)
(in module dedalus.tests.test_polar_ncc)
(in module dedalus.tests.test_sphere_ncc)
testpath (in module dedalus.tests)
threshold (in module dedalus.libraries.dedalus_sphere.spin_operators)
(TensorOperator property)
TimeDerivative (class in dedalus.core.operators)
timing (in module dedalus.libraries.dedalus_sphere.ball_wrapper)
top_right (Frame property)
towards_coeff_space() (Field method)
(LockedField method)
towards_grid_space() (Field method)
(LockedField method)
Trace (class in dedalus.core.operators)
(class in dedalus.libraries.dedalus_sphere.spin_operators)
track() (in module dedalus.tools.progress)
trans (SuperluColamdFactorizedTranspose attribute)
(SuperluNaturalFactorizedTranspose attribute)
Transform (class in dedalus.core.transforms)
transform_plan() (AnnulusBasis method)
(BallBasis method)
(DiskBasis method)
(Jacobi method)
(SphereBasis method)
transforms (AnnulusBasis attribute)
(BallBasis attribute)
(ComplexFourier attribute)
(DiskBasis attribute)
(Jacobi attribute)
(RealFourier attribute)
(SphereBasis attribute)
Transpose (class in dedalus.libraries.dedalus_sphere.spin_operators)
TransposeComponents (class in dedalus.core.operators)
Tree (class in dedalus.tools.plot_op)
trial_functions() (in module dedalus.libraries.dedalus_sphere.annulus)
tuple2index() (in module dedalus.libraries.dedalus_sphere.tuple_tools)
U
ufuncs (in module dedalus.tests.test_grid_operators)
Ultraspherical() (in module dedalus.core.basis)
UmfpackFactorized (class in dedalus.libraries.matsolvers)
UmfpackSpsolve (class in dedalus.libraries.matsolvers)
UnaryGridFunction (class in dedalus.core.operators)
UndefinedParityError
unify() (in module dedalus.tools.general)
unify_attributes() (in module dedalus.tools.general)
unit_vector_fields() (CartesianCoordinates method)
unitary() (Sphere method)
unitary3D() (Ball method)
unpack() (Ball method)
unpack_rescale() (FFTWHalfComplexFFT method)
(RealFFT method)
UnsupportedEquationError
update() (OrderedSet method)
USE_UMFPACK (in module dedalus.libraries.dedalus_sphere.timesteppers)
V
valid_elements() (ComplexFourier method)
(Jacobi method)
(RealFourier method)
(SphereBasis method)
valid_modes() (Subproblem method)
VectorField() (Distributor method)
(in module dedalus.core.field)
visit_writes() (in module dedalus.tools.post)
volume() (Domain method)
volume_average() (GlobalFlowProperty method)
volume_integral() (GlobalFlowProperty method)
W
wall_time (InitialValueSolver property)
wavenumbers (ComplexFourierTransform property)
(CosineTransform property)
(RealFourierTransform property)
wavenumbers() (in module dedalus.tests.ball_diffusion_analytical_eigenvalues)
weight() (Ball method)
Woodbury (class in dedalus.libraries.matsolvers)
woodbury_matsolvers (in module dedalus.libraries.matsolvers)
world_time (InitialValueSolver property)
write_file_metadata() (H5FileHandlerBase method)
(H5GatherFileHandler method)
(H5VirtualFileHandler method)
write_task() (H5FileHandlerBase method)
(H5GatherFileHandler method)
(H5ParallelFileHandler method)
(H5VirtualFileHandler method)
X
xbox (Box property)
xfail_param() (in module dedalus.tests.test_cartesian_ncc)
(in module dedalus.tests.test_lbvp)
(in module dedalus.tests.test_spherical_ncc)
xi() (Ball method)
(in module dedalus.libraries.dedalus_sphere.spin_operators)
Y
ybox (Box property)
Z
ZernikeCodomain (class in dedalus.libraries.dedalus_sphere.zernike)
ZernikeOperator (class in dedalus.libraries.dedalus_sphere.zernike)
zeros() (Sphere method)
zeros_with_pattern() (in module dedalus.tools.array)
Γ
γ (RK222 attribute)
Δ
δ (RK222 attribute)
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